Bioinformatics Algorithms for Molecular Docking: IT and Chemistry Synergy

Authors

  • Marcus Rodriguez Princeton Institute for Computational Science and Engineering (PICSciE), Princeton University, NJ, USA
  • Jayadip GhanshyamBhai Tejani Industrial Chemist, Production Department, National Rubber Corporation, Canonsburg, PA, USA
  • Rajani Pydipalli Senior Team Lead, FSP Programming, Cytel Statistical Software Solutions, India
  • Bhavik Patel PCB Design Engineer, Innovative Electronics Corporation, Pittsburgh, PA, USA

DOI:

https://doi.org/10.18034/apjee.v5i2.742

Keywords:

Bioinformatics, Molecular Docking, Computational Chemistry, IT, Chemistry Synergy, Computational Biology

Abstract

Drug discovery and molecular biology can be advanced through the synergistic combination of bioinformatics techniques and molecular docking. This research attempts to investigate the most recent developments in this multidisciplinary subject, emphasizing enhancing the efficiency and accuracy of predictions. The process entails a thorough literature review and an analysis of significant advancements in search algorithms, machine learning integration, and scoring systems. Notable discoveries include improved search and scoring algorithms powered by machine learning methods that enhance protein flexibility and binding affinity predictions. The report highlights issues like data availability and computational complexity and suggests policy solutions, such as data-sharing programs, computational infrastructure investments, and regulatory guidelines for AI-driven drug discovery. This study highlights the revolutionary potential of bioinformatics docking synergy, opening the door for faster therapeutic advancements in the biomedical sciences and personalized medicine.

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References

Anumandla, S. K. R. (2018). AI-enabled Decision Support Systems and Reciprocal Symmetry: Empowering Managers for Better Business Outcomes. International Journal of Reciprocal Symmetry and Theoretical Physics, 5, 33-41. https://upright.pub/index.php/ijrstp/article/view/129

Bansal, A. K. (2008). Role of Bioinformatics in the Development of New Antibacterial Therapy. Expert Review of Anti-Infective Therapy, 6(1), 51-65. https://doi.org/10.1586/14787210.6.1.51 DOI: https://doi.org/10.1586/14787210.6.1.51

Ekins, S., Madrid, P. B., Sarker, M., Shao-Gang, L., Mittal, N. (2015). Combining Metabolite-Based Pharmacophores with Bayesian Machine Learning Models for Mycobacterium tuberculosis Drug Discovery. PLoS One, 10(10), e0141076. https://doi.org/10.1371/journal.pone.0141076 DOI: https://doi.org/10.1371/journal.pone.0141076

Frank, M., Schloissnig, S. (2010). Bioinformatics and Molecular Modeling in Glycobiology. Cellular and Molecular Life Sciences, 67(16), 2749-72. https://doi.org/10.1007/s00018-010-0352-4 DOI: https://doi.org/10.1007/s00018-010-0352-4

Gill, S., Christopher, A., Gupta, V., & Bansal, P. (2016). Emerging Role of Bioinformatics Tools and Software in Evolution of Clinical Research. Perspectives in Clinical Research, 7(3). https://doi.org/10.4103/2229-3485.184782 DOI: https://doi.org/10.4103/2229-3485.184782

Guo, T., Kang, W., Xiao, D., Duan, R., Zhi, W. (2014). Molecular Docking Characterization of a Four-Domain Segment of Human Fibronectin Encompassing the RGD Loop with Hydroxyapatite. Molecules, 19(1), 149-158. https://doi.org/10.3390/molecules19010149 DOI: https://doi.org/10.3390/molecules19010149

Khair, M. A. (2018). Security-Centric Software Development: Integrating Secure Coding Practices into the Software Development Lifecycle. Technology & Management Review, 3, 12-26. https://upright.pub/index.php/tmr/article/view/124

Mphahlele, M. J., Mmonwa, M. M., Aro, A., McGaw, L. J., Choong, Y. S. (2018). Synthesis, Biological Evaluation and Molecular Docking of Novel Indole-Aminoquinazoline Hybrids for Anticancer Properties. International Journal of Molecular Sciences, 19(8), 2232. https://doi.org/10.3390/ijms19082232 DOI: https://doi.org/10.3390/ijms19082232

Mullangi, K. (2017). Enhancing Financial Performance through AI-driven Predictive Analytics and Reciprocal Symmetry. Asian Accounting and Auditing Advancement, 8(1), 57–66. https://4ajournal.com/article/view/89

Rockey, W. M., Hernandez, F. J., Huang, S-Y., Cao, S., Howell, C. A. (2011). Rational Truncation of an RNA Aptamer to Prostate-Specific Membrane Antigen Using Computational Structural Modeling. Nucleic Acid Therapeutics, 21(5), 299-314. https://doi.org/10.1089/nat.2011.0313 DOI: https://doi.org/10.1089/nat.2011.0313

Sandu, A. K., Surarapu, P., Khair, M. A., & Mahadasa, R. (2018). Massive MIMO: Revolutionizing Wireless Communication through Massive Antenna Arrays and Beamforming. International Journal of Reciprocal Symmetry and Theoretical Physics, 5, 22-32. https://upright.pub/index.php/ijrstp/article/view/125

Shajahan, M. A. (2018). Fault Tolerance and Reliability in AUTOSAR Stack Development: Redundancy and Error Handling Strategies. Technology & Management Review, 3, 27-45. https://upright.pub/index.php/tmr/article/view/126

Singh, D. B., Gupta, M. K., Singh, D. V., Singh, S. K., Misra, K. (2013). Docking and in Silico ADMET Studies of Noraristeromycin, Curcumin and its Derivatives with Plasmodium Falciparum SAH Hydrolase: A Molecular Drug Target Against Malaria. Interdisciplinary Sciences, Computational Life Sciences, 5(1), 1-12. https://doi.org/10.1007/s12539-013-0147-z DOI: https://doi.org/10.1007/s12539-013-0147-z

Tejani, J. G. (2017). Thermoplastic Elastomers: Emerging Trends and Applications in Rubber Manufacturing. Global Disclosure of Economics and Business, 6(2), 133-144. https://doi.org/10.18034/gdeb.v6i2.737 DOI: https://doi.org/10.18034/gdeb.v6i2.737

Ying, D., Patel, B., & Dhameliya, N. (2017). Managing Digital Transformation: The Role of Artificial Intelligence and Reciprocal Symmetry in Business. ABC Research Alert, 5(3), 67–77. https://doi.org/10.18034/ra.v5i3.659 DOI: https://doi.org/10.18034/ra.v5i3.659

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Published

2018-12-31

How to Cite

Rodriguez, M., Tejani, J. G., Pydipalli, R., & Patel, B. (2018). Bioinformatics Algorithms for Molecular Docking: IT and Chemistry Synergy. Asia Pacific Journal of Energy and Environment, 5(2), 113-122. https://doi.org/10.18034/apjee.v5i2.742